Description

ephrin-B1 [Source:HGNC Symbol;Acc:HGNC:3226]

Synonyms

CFNS, Elk-L, EPLG2, LERK2

Location
About this transcript

This transcript has 5 exons, is annotated with 12 domains and features, is associated with 172 variations and maps to 29 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
EFNB1-001ENST000002049613314346aaENSP00000204961
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14391P98172 NM_004429
NP_004420
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 5 Coding exons: 5 Transcript length: 3,314 bps Translation length: 346 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS14391

Uniprot

This transcript corresponds to the following Uniprot identifiers: P98172

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000204961.4

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays