Description

charged multivesicular body protein 2B [Source:HGNC Symbol;Acc:HGNC:24537]

Synonyms

CHMP2.5, DKFZP564O123, VPS2B

Location
About this transcript

This transcript has 6 exons, is annotated with 5 domains and features, is associated with 85 variations and maps to 36 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
CHMP2B-001ENST000002637802557213aaENSP00000263780
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS2918B2RE76 Q9UQN3 NM_014043
NP_054762
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

CHMP2B-002ENST000004716602528172aaENSP00000419998
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58840Q9UQN3 NM_001244644
NP_001231573
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CHMP2B-004ENST000004949801175183aaENSP00000418920
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J0A7 -TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
CHMP2B-003ENST00000472024836179aaENSP00000480032
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WW88 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CHMP2B-005ENST00000466696664No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 6 Coding exons: 6 Transcript length: 2,557 bps Translation length: 213 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS2918

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UQN3

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000263780.7

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays