Description

epiphycan [Source:HGNC Symbol;Acc:HGNC:3053]

Synonyms

DSPG3, Pg-Lb, SLRR3B

Location
About this transcript

This transcript has 7 exons, is annotated with 9 domains and features, is associated with 110 variations and maps to 9 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
EPYC-001ENST000002611721539322aaENSP00000261172
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS31870A0A024RBC3 Q99645 NM_004950
NP_004941
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
EPYC-002ENST00000551767790234aaENSP00000448272
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VSI4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

EPYC-003ENST00000550203669No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 7 Coding exons: 6 Transcript length: 1,539 bps Translation length: 322 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS31870

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q99645

Transcript Support Level (TSL)

TSL:1

Ensembl version

ENST00000261172.6

Type

Known protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays