Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 [Source:HGNC Symbol;Acc:HGNC:11098]

Synonyms

BAF190, BRM, hBRM, hSNF2a, SNF2, SNF2L2, SNF2LA, Sth1p, SWI2

Location
Gene

This transcript is a product of gene ENSG00000080503

This gene has 17 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
SMARCA2-202ENST0000034972158771590 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34977B1ALG2 B1ALG5 F6RS74
F6VDE0 P51531 Q56A76
Q6LC24 SMARCA2-202
NM_003070
NP_003061
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SMARCA2-003ENST0000038220358671590 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34977B1ALG2 B1ALG5 F6RS74
F6VDE0 P51531 Q56A76
Q6LC24 SMARCA2-003
NM_001289396
NP_001276325
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SMARCA2-203ENST0000035724858231572 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34978B1ALG1 B1ALG5 F6RS74
F6UH26 F6VDE0 P51531
Q56A76 Q6LC24 SMARCA2-203
NM_001289397
NM_139045
NP_001276326
NP_620614
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
SMARCA2-004ENST0000038219455611572 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34978B1ALG1 B1ALG5 F6RS74
F6UH26 F6VDE0 P51531
Q56A76 Q6LC24 SMARCA2-004
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
SMARCA2-001ENST000003024012239278 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75808B1ALF6 B1ALG1 B1ALG5
B4DNT1 F6UH26 F6XE55
SMARCA2-001
NM_001289399
NM_001289400
NP_001276328
NP_001276329
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SMARCA2-201ENST000003249541831248 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75807B1ALG1 B1ALG5 F6UH26
SMARCA2-201
NM_001289398
NP_001276327
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SMARCA2-009ENST000003821851787236 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1ALG1 B1ALG5 F6UH26
SMARCA2-009
-TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SMARCA2-008ENST000004501981744559 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6RS74 F6VDE0 Q56A76
Q6LC24 SMARCA2-008
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SMARCA2-013ENST000003821831121236 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1ALG1 B1ALG5 F6UH26
SMARCA2-013
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SMARCA2-010ENST00000382186947254 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B1ALG2 B1ALG5 SMARCA2-010
-TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SMARCA2-012ENST00000417599921271 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6UH26 F6XE55 F6XG14
SMARCA2-012
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SMARCA2-011ENST00000452193750171 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-SMARCA2-011 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SMARCA2-014ENST00000423555594153 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6XE55 SMARCA2-014 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SMARCA2-015ENST00000416751587177 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6UH26 SMARCA2-015 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SMARCA2-005ENST00000439732564155 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6RS74 SMARCA2-005 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SMARCA2-006ENST0000045722635666 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F6RS74 SMARCA2-006 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SMARCA2-007ENST00000491574626No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
-SMARCA2-007 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 9 Coding exons: 6 Transcript length: 1,787 bps Translation length: 236 residues

Transcript Support Level

3

Ensembl version

ENST00000382185.3

Type

Known protein coding

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays