Transcript: ENST00000177694.2 TBX21-201

Description

T-box transcription factor 21 [Source:HGNC Symbol;Acc:HGNC:11599]

Gene Synonyms

T-BET, TBLYM

Location

Chromosome 17: 47,733,236-47,746,122 forward strand.

About this transcript

This transcript has 6 exons, is annotated with 23 domains and features, is associated with 5947 variant alleles and maps to 345 oligo probes.

Gene

This transcript is a product of gene ENSG00000073861.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000177694.2	TBX21-201	2583	535aa	ENSP00000177694.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS11514	Q9UL17	NM_013351.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000581328.1	TBX21-202	718	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 6, Coding exons: 6, Transcript length: 2,583 bps, Translation length: 535 residues

MANE

This MANE Select transcript contains ENSP00000177694 and matches to NM_013351.2 and NP_037483.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9UL17

CCDS

This transcript is a member of the Human CCDS set: CCDS11514

Transcript Support Level (TSL)

TSL:1

Version

ENST00000177694.2

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000177694.2 TBX21-201

Summary

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: ENST00000177694.2 TBX21-201

Summary

About Us

Get help

Our sister sites

Follow us