Description

forkhead box C1 [Source:HGNC Symbol;Acc:HGNC:3800]

Synonyms

ARA, FKHL7, FREAC3, IGDA, IHG1, IRID1

Location
About this transcript

This transcript has 1 exon, is annotated with 25 domains and features, is associated with 174 variations and maps to 39 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
FOXC1-001ENST000003808743926553aaENSP00000370256
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4473Q12948 W6CJ52 NM_001453
NP_001444
TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Statistics

Exons: 1 Coding exons: 1 Transcript length: 3,926 bps Translation length: 553 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS4473

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q12948

Transcript Support Level (TSL)

TSL:NA

Ensembl version

ENST00000380874.3

Type

Known protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays