Description

macrophage scavenger receptor 1 [Source:HGNC Symbol;Acc:HGNC:7376]

Synonyms

CD204, SCARA1

Location
Gene

This transcript is a product of gene ENSG00000038945

This gene has 14 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
MSR1-201ENST000003508963572 bp388 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5996E5RFW8 P21757 NM_138716
NP_619730
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
MSR1-003ENST000003819982826 bp358 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5997E5RFW8 F5GZJ2 P21757
NM_002445
NP_002436
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
MSR1-001ENST000002621012132 bp451 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5995E5RFW8 P21757 NM_138715
NP_619729
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
MSR1-002ENST000003552821167 bp388 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5996E5RFW8 P21757 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
MSR1-004ENST000004455061513 bp469 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B4DDJ5 E5RFW8 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
MSR1-006ENST00000522672695 bp149 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YBY2 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
MSR1-007ENST00000518026530 bp58 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E5RI91 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
MSR1-008ENST00000518960353 bp64 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E5RFW8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
MSR1-005ENST000005190601009 bp37 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E5RFI4 -
MSR1-010ENST00000518343597 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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MSR1-011ENST00000521876540 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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MSR1-009ENST00000522130489 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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MSR1-013ENST00000517522403 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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MSR1-012ENST00000520846373 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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Statistics

Exons: 10 Coding exons: 9 Transcript length: 2,132 bps Translation length: 451 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS5995

Uniprot

This transcript corresponds to the following Uniprot identifiers: P21757

Ensembl version

ENST00000262101.6

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays