Description

four and a half LIM domains 1 [Source:HGNC Symbol;Acc:HGNC:3702]

Synonyms

bA535K18.1, FHL1B, FLH1A, KYO-T, MGC111107, SLIM1, XMPMA

Gene

This transcript is a product of gene ENSG00000022267

This gene has 19 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
FHL1-205ENST000005436692888280 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14655Q13642 Q5JXH7 Q5JXH8
Q5JXH9 Q5JXI0 Q5JXI3
Q5JXI8
NM_001159704
NP_001153176
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FHL1-202ENST000003941552706323 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS55507Q13642 Q5JXH7 Q5JXH8
Q5JXH9 Q5JXI0 Q5JXI3
NM_001159702
NP_001153174
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FHL1-004ENST000003706832565296 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS55506B7Z5V0 Q13642 Q5JXH7
Q5JXH8 Q5JXH9 Q5JXI0
Q5JXI3 Q5JXI8
NM_001159699
NP_001153171
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
FHL1-002ENST000003454342458323 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS55507Q13642 Q5JXH7 Q5JXH8
Q5JXH9 Q5JXI0 Q5JXI3
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FHL1-001ENST000003706902441280 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14655Q13642 Q5JXH7 Q5JXH8
Q5JXH9 Q5JXI0 Q5JXI3
Q5JXI8
NM_001449
NP_001440
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FHL1-203ENST000005357372437280 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14655Q13642 Q5JXH7 Q5JXH8
Q5JXH9 Q5JXI0 Q5JXI3
Q5JXI8
NM_001159700
NP_001153172
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FHL1-201ENST000003941532374280 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS14655Q13642 Q5JXH7 Q5JXH8
Q5JXH9 Q5JXI0 Q5JXI3
Q5JXI8
NM_001167819
NP_001161291
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FHL1-206ENST000006184382319194 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS76036Q13642 Q5JXH9 Q5JXI0
NM_001159703
NP_001153175
TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FHL1-204ENST000005390152313309 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS55505Q13642 Q5JXH7 Q5JXH8
Q5JXH9 Q5JXI0 Q5JXI3
Q5JXI8
NM_001159701
NP_001153173
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FHL1-007ENST000003706741017257 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5JXH7 Q5JXH8 Q5JXH9
Q5JXI0 Q5JXI3 Q5JXI8
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FHL1-006ENST00000420362926204 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5JXH8 Q5JXH9 Q5JXI0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FHL1-003ENST00000370676833210 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5JXH9 Q5JXI0 Q5JXI2
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
FHL1-008ENST00000452016796207 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5JXH7 Q5JXH8 Q5JXH9
Q5JXI0 Q5JXI3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FHL1-010ENST00000434885796207 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5JXH7 Q5JXH8 Q5JXH9
Q5JXI0 Q5JXI3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FHL1-012ENST00000456445775205 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5JXH7 Q5JXH8 Q5JXH9
Q5JXI0
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FHL1-011ENST00000458357601155 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5JXH9 Q5JXI0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FHL1-013ENST00000449474539141 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5JXI0 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FHL1-009ENST00000477080859No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

FHL1-005ENST00000477204790No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 6 Coding exons: 6 Transcript length: 2,565 bps Translation length: 296 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS55506

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q13642

Transcript Support Level

1

Ensembl version

ENST00000370683.3

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays