Description

ATPase, Ca++ transporting, type 2C, member 1 [Source:HGNC Symbol;Acc:HGNC:13211]

Synonyms

ATP2C1A, BCPM, KIAA1347, PMR1, SPCA1

Gene

This transcript is a product of gene ENSG00000017260

This gene has 24 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
ATP2C1-008ENST000005101685067 bp919 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46914D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-001ENST000005085324969 bp919 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46914D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
NM_001199179
NP_001186108
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-011ENST000004283314795 bp919 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46914D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
NM_014382
NP_055197
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-004ENST000005049484714 bp903 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56281D6R9U9 D6RGE9 P98194
NM_001199184
NP_001186113
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-201ENST000005338013690 bp888 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46913D6R9U9 D6REJ1 D6RGE9
D6RHV9
NM_001001485
NP_001001485
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-010ENST000005074883579 bp973 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56278D6R9U9 D6RGE9 P98194
NM_001199180
NP_001186109
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-007ENST000005043813498 bp944 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56279D6R9U9 E7ERC6 NM_001199182
NP_001186111
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-002ENST000003285603484 bp888 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46913D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
NM_001199185
NP_001186114
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-003ENST000005138013439 bp923 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56280D6R9U9 D6RGE9 P98194
NM_001199183
NP_001186112
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-005ENST000003596443401 bp949 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS33856D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
NM_001001486
NP_001001486
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-020ENST000004221903386 bp939 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46912D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
NM_001001487
NP_001001487
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-009ENST000005053304888 bp953 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B4E2Q0 D6R9U9 D6RGE9
P98194
NM_001199181
NP_001186110
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-006ENST000005046123148 bp903 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6R9U9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
ATP2C1-017ENST00000508660943 bp314 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
ATP2C1-019ENST00000515854561 bp131 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6R9U9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATP2C1-014ENST00000509662559 bp102 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6REJ1 D6RGE9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATP2C1-021ENST00000505072556 bp120 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6REJ1 D6RGE9 D6RHV9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATP2C1-015ENST00000508297540 bp82 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RGE9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATP2C1-013ENST00000504571786 bp215 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H0Y8X9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
ATP2C1-018ENST00000507194651 bp50 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H0YAH2 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
ATP2C1-023ENST00000509150573 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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ATP2C1-012ENST000005146544730 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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ATP2C1-016ENST00000513636590 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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ATP2C1-022ENST00000510774555 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 4 Coding exons: 0 Transcript length: 590 bps

Ensembl version

ENST00000513636.1

Type

Known retained intron

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays