Description

ATPase, Ca++ transporting, type 2C, member 1 [Source:HGNC Symbol;Acc:HGNC:13211]

Synonyms

ATP2C1A, BCPM, KIAA1347, PMR1, SPCA1

Gene

This transcript is a product of gene ENSG00000017260

This gene has 24 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
ATP2C1-008ENST000005101685067 bp919 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46914D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
-GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-001ENST000005085324969 bp919 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46914D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
NM_001199179
NP_001186108
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-011ENST000004283314795 bp919 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46914D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
NM_014382
NP_055197
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-004ENST000005049484714 bp903 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56281D6R9U9 D6RGE9 P98194
NM_001199184
NP_001186113
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-201ENST000005338013690 bp888 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46913D6R9U9 D6REJ1 D6RGE9
D6RHV9
NM_001001485
NP_001001485
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-010ENST000005074883579 bp973 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56278D6R9U9 D6RGE9 P98194
NM_001199180
NP_001186109
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-007ENST000005043813498 bp944 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56279D6R9U9 E7ERC6 NM_001199182
NP_001186111
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-002ENST000003285603484 bp888 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46913D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
NM_001199185
NP_001186114
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-003ENST000005138013439 bp923 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56280D6R9U9 D6RGE9 P98194
NM_001199183
NP_001186112
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-005ENST000003596443401 bp949 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS33856D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
NM_001001486
NP_001001486
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-020ENST000004221903386 bp939 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46912D6R9U9 D6REJ1 D6RGE9
D6RHV9 P98194
NM_001001487
NP_001001487
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-009ENST000005053304888 bp953 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B4E2Q0 D6R9U9 D6RGE9
P98194
NM_001199181
NP_001186110
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
ATP2C1-006ENST000005046123148 bp903 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6R9U9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
ATP2C1-017ENST00000508660943 bp314 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' and 3' incomplete5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.
ATP2C1-019ENST00000515854561 bp131 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6R9U9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATP2C1-014ENST00000509662559 bp102 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6REJ1 D6RGE9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATP2C1-021ENST00000505072556 bp120 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6REJ1 D6RGE9 D6RHV9
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATP2C1-015ENST00000508297540 bp82 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RGE9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.
ATP2C1-013ENST00000504571786 bp215 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H0Y8X9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
ATP2C1-018ENST00000507194651 bp50 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-H0YAH2 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
ATP2C1-023ENST00000509150573 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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ATP2C1-012ENST000005146544730 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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ATP2C1-016ENST00000513636590 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---
ATP2C1-022ENST00000510774555 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Statistics

Exons: 27 Coding exons: 27 Transcript length: 4,888 bps Translation length: 953 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: P98194

Ensembl version

ENST00000505330.2

Type

Novel protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays