Description

Usher syndrome 1C (autosomal recessive, severe) [Source:HGNC Symbol;Acc:12597]

Location
Gene

This transcript is a product of gene ENSG00000006611

This gene has 10 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLength (bp)Protein IDLength (aa)BiotypeCDS incompleteCCDSGENCODE basic
USH1C-006ENST000000052262700ENSP00000005226899Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS7825YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
USH1C-001ENST000003180242237ENSP00000317018552Protein codingGenes and/or transcript that contains an open reading frame (ORF).-CCDS31438YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
USH1C-005ENST000005277202278ENSP00000432944521Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
USH1C-003ENST000005270202159ENSP00000436934533Protein codingGenes and/or transcript that contains an open reading frame (ORF).--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
USH1C-008ENST000005261811040ENSP00000437128318Protein codingGenes and/or transcript that contains an open reading frame (ORF).3'--
USH1C-002ENST000005263132149ENSP00000432236403Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. ---
USH1C-009ENST00000529563942No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.--YThe GENCODE Basic set includes all genes in the GENCODE gene set but only a subset of the transcripts.
USH1C-011ENST00000530700403No protein product-Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.---
USH1C-010ENST00000527551371No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
USH1C-012ENST00000534556244No protein product-Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.---
Statistics

Exons: 21 Coding exons: 21 Transcript length: 2,237 bps Translation length: 552 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS31438

Ensembl version

ENST00000318024.4

Type

Known protein coding

Prediction Method

Transcript where the Ensembl genebuild transcript and the Vega manual annotation have the same sequence, for every base pair. See article.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Transcript having exact match between ENSEMBL and HAVANA:
OTTHUMT00000389146 (version 1)
GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript-based displays