Description

cystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7) [Source:HGNC Symbol;Acc:HGNC:1884]

Synonyms

ABC35, ABCC7, CF, CFTR/MRP, dJ760C5.1, MRP7, TNR-CFTR

Gene

This transcript is a product of gene ENSG00000001626

This gene has 11 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
CFTR-001ENST0000000308461321480 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS5773A0A024R730 A4L9V0 C9J6L5
P13569 Q5I6F9 Q5I6N4
Q5I6N5 Q5I6N6 Q5I6N7
Q6KE95 Q6KEA0 Q6KEA5
Q6KEB2 Q6KEB8 Q6KEC3
Q6KEC8 Q6KED3 Q6KED8
Q6KEE3 Q6KEE7 Q6KEF5
Q6KEF9 Q6KEG3 Q6KEG6
Q6KEG9 Q6KEH3 Q6KEH6
Q6KEH8 Q6KEI2 Q6KEI7
Q6KEI8 Q6KEJ1 Q6KEJ4
Q6KEJ7 Q99989 Q9UJ19
Q9UML7
NM_000492
NP_000483
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
CFTR-005ENST0000042680943161438 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A4L9V0 C9J6L5 E7EPB6
Q5I6N4 Q5I6N5 Q5I6N7
Q6KEA0 Q6KEA5 Q6KEB2
Q6KEB8 Q6KEC3 Q6KEC8
Q6KED3 Q6KED8 Q6KEE3
Q6KEE7 Q6KEF5 Q6KEF9
Q6KEG3 Q6KEG6 Q6KEG9
Q6KEH3 Q6KEH6 Q6KEH8
Q6KEI2 Q6KEI8 Q6KEJ1
Q6KEJ4 Q6KEJ7 Q9UJ19
Q9UML7
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CFTR-002ENST00000468795682190 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6KEC3 Q6KEC8 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CFTR-004ENST0000044680557537 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J6L5 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CFTR-008ENST00000600166559156 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q6KEA0 Q6KEA5 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CFTR-009ENST00000608965896No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CFTR-010ENST00000610149519No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CFTR-007ENST00000429014423No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CFTR-003ENST00000546407222No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CFTR-006ENST00000472848148No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

CFTR-011ENST00000621535657No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Statistics

Exons: 3 Coding exons: 0 Transcript length: 222 bps

Transcript Support Level

1

Ensembl version

ENST00000546407.1

Type

Known processed transcript

Prediction Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Alternative transcripts

This transcript corresponds to the following database identifiers:

Havana transcript:

Transcript-based displays