Transcript: ENST00000547220.6 DUXAP9-202

Description

double homeobox A pseudogene 9 [Source:NCBI gene (formerly Entrezgene);Acc:503638]

Gene Synonyms

LINC01296, LNMAT1, SAN

Location

Chromosome 14: 19,062,349-19,131,217 forward strand.

About this transcript

This transcript has 7 exons and maps to 700 oligo probes.

Gene

This transcript is a product of gene ENSG00000293329.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000834340.1	DUXAP9-210	950	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000834368.1	DUXAP9-238	2651	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000621361.4	DUXAP9-208	2397	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000834394.1	DUXAP9-264	2336	No protein	-	lncRNA	-	-
ENST00000834443.1	DUXAP9-313	2280	No protein	-	lncRNA	-	-
ENST00000834439.1	DUXAP9-309	2256	No protein	-	lncRNA	-	-
ENST00000834447.1	DUXAP9-317	2250	No protein	-	lncRNA	-	-
ENST00000834438.1	DUXAP9-308	2242	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000834451.1	DUXAP9-321	2208	No protein	-	lncRNA	-	-
ENST00000834442.1	DUXAP9-312	2201	No protein	-	lncRNA	-	-
ENST00000834455.1	DUXAP9-325	2181	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000834435.1	DUXAP9-305	2175	No protein	-	lncRNA	-	-
ENST00000834445.1	DUXAP9-315	2169	No protein	-	lncRNA	-	-
ENST00000834446.1	DUXAP9-316	2139	No protein	-	lncRNA	-	-
ENST00000834444.1	DUXAP9-314	2132	No protein	-	lncRNA	-	-
ENST00000834398.1	DUXAP9-268	2130	No protein	-	lncRNA	-	-
ENST00000834452.1	DUXAP9-322	2119	No protein	-	lncRNA	-	-
ENST00000834450.1	DUXAP9-320	2118	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000834396.1	DUXAP9-266	2086	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000834448.1	DUXAP9-318	2025	No protein	-	lncRNA	-	-
ENST00000834441.1	DUXAP9-311	2021	No protein	-	lncRNA	-	-
ENST00000834395.1	DUXAP9-265	2018	No protein	-	lncRNA	-	-
ENST00000834456.1	DUXAP9-326	1954	No protein	-	lncRNA	-	-
ENST00000834436.1	DUXAP9-306	1933	No protein	-	lncRNA	-	-
ENST00000834453.1	DUXAP9-323	1895	No protein	-	lncRNA	-	-
ENST00000834440.1	DUXAP9-310	1891	No protein	-	lncRNA	-	-
ENST00000834449.1	DUXAP9-319	1851	No protein	-	lncRNA	-	-
ENST00000834437.1	DUXAP9-307	1796	No protein	-	lncRNA	-	-
ENST00000834457.1	DUXAP9-327	1749	No protein	-	lncRNA	-	-
ENST00000834399.1	DUXAP9-269	1718	No protein	-	lncRNA	-	-
ENST00000834405.1	DUXAP9-275	1689	No protein	-	lncRNA	-	-
ENST00000834454.1	DUXAP9-324	1555	No protein	-	lncRNA	-	-
ENST00000834341.1	DUXAP9-211	1498	No protein	-	lncRNA	-	-
ENST00000834459.1	DUXAP9-329	1472	No protein	-	lncRNA	-	-
ENST00000834356.1	DUXAP9-226	1421	No protein	-	lncRNA	-	-
ENST00000834347.1	DUXAP9-217	1417	No protein	-	lncRNA	-	-
ENST00000834344.1	DUXAP9-214	1414	No protein	-	lncRNA	-	-
ENST00000834406.1	DUXAP9-276	1408	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000834400.1	DUXAP9-270	1374	No protein	-	lncRNA	-	-
ENST00000834359.1	DUXAP9-229	1368	No protein	-	lncRNA	-	-
ENST00000834372.1	DUXAP9-242	1350	No protein	-	lncRNA	-	-
ENST00000549484.6	DUXAP9-203	1341	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000834402.1	DUXAP9-272	1337	No protein	-	lncRNA	-	-
ENST00000834342.1	DUXAP9-212	1315	No protein	-	lncRNA	-	-
ENST00000834413.1	DUXAP9-283	1304	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000834411.1	DUXAP9-281	1303	No protein	-	lncRNA	-	-
ENST00000834379.1	DUXAP9-249	1288	No protein	-	lncRNA	-	-
ENST00000834409.1	DUXAP9-279	1273	No protein	-	lncRNA	-	-
ENST00000834407.1	DUXAP9-277	1265	No protein	-	lncRNA	-	-
ENST00000547220.6	DUXAP9-202	1256	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000834408.1	DUXAP9-278	1247	No protein	-	lncRNA	-	-
ENST00000834346.1	DUXAP9-216	1245	No protein	-	lncRNA	-	-
ENST00000644980.2	DUXAP9-209	1223	No protein	-	lncRNA	-	-
ENST00000834404.1	DUXAP9-274	1214	No protein	-	lncRNA	-	-
ENST00000834412.1	DUXAP9-282	1199	No protein	-	lncRNA	-	-
ENST00000834401.1	DUXAP9-271	1188	No protein	-	lncRNA	-	-
ENST00000834380.1	DUXAP9-250	1183	No protein	-	lncRNA	-	-
ENST00000834374.1	DUXAP9-244	1175	No protein	-	lncRNA	-	-
ENST00000834345.1	DUXAP9-215	1157	No protein	-	lncRNA	-	-
ENST00000834377.1	DUXAP9-247	1149	No protein	-	lncRNA	-	-
ENST00000834410.1	DUXAP9-280	1148	No protein	-	lncRNA	-	-
ENST00000834373.1	DUXAP9-243	1147	No protein	-	lncRNA	-	-
ENST00000834364.1	DUXAP9-234	1144	No protein	-	lncRNA	-	-
ENST00000834365.1	DUXAP9-235	1120	No protein	-	lncRNA	-	-
ENST00000834376.1	DUXAP9-246	1093	No protein	-	lncRNA	-	-
ENST00000834350.1	DUXAP9-220	1085	No protein	-	lncRNA	-	-
ENST00000834371.1	DUXAP9-241	1080	No protein	-	lncRNA	-	-
ENST00000834462.1	DUXAP9-332	1076	No protein	-	lncRNA	-	-
ENST00000834403.1	DUXAP9-273	1066	No protein	-	lncRNA	-	-
ENST00000619210.1	DUXAP9-205	1060	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000834349.1	DUXAP9-219	1052	No protein	-	lncRNA	-	-
ENST00000834343.1	DUXAP9-213	1032	No protein	-	lncRNA	-	-
ENST00000834392.1	DUXAP9-262	1018	No protein	-	lncRNA	-	-
ENST00000834366.1	DUXAP9-236	1015	No protein	-	lncRNA	-	-
ENST00000834363.1	DUXAP9-233	1009	No protein	-	lncRNA	-	-
ENST00000834415.1	DUXAP9-285	1008	No protein	-	lncRNA	-	-
ENST00000834384.1	DUXAP9-254	1007	No protein	-	lncRNA	-	-
ENST00000834460.1	DUXAP9-330	1003	No protein	-	lncRNA	-	-
ENST00000834361.1	DUXAP9-231	994	No protein	-	lncRNA	-	-
ENST00000834430.1	DUXAP9-300	993	No protein	-	lncRNA	-	-
ENST00000834386.1	DUXAP9-256	982	No protein	-	lncRNA	-	-
ENST00000834464.1	DUXAP9-334	981	No protein	-	lncRNA	-	-
ENST00000834417.1	DUXAP9-287	970	No protein	-	lncRNA	-	-
ENST00000834423.1	DUXAP9-293	960	No protein	-	lncRNA	-	-
ENST00000834461.1	DUXAP9-331	960	No protein	-	lncRNA	-	-
ENST00000834369.1	DUXAP9-239	958	No protein	-	lncRNA	-	-
ENST00000834419.1	DUXAP9-289	951	No protein	-	lncRNA	-	-
ENST00000834355.1	DUXAP9-225	950	No protein	-	lncRNA	-	-
ENST00000834353.1	DUXAP9-223	942	No protein	-	lncRNA	-	-
ENST00000834385.1	DUXAP9-255	936	No protein	-	lncRNA	-	-
ENST00000834381.1	DUXAP9-251	934	No protein	-	lncRNA	-	-
ENST00000834351.1	DUXAP9-221	928	No protein	-	lncRNA	-	-
ENST00000834382.1	DUXAP9-252	927	No protein	-	lncRNA	-	-
ENST00000834367.1	DUXAP9-237	918	No protein	-	lncRNA	-	-
ENST00000610585.4	DUXAP9-204	903	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000834370.1	DUXAP9-240	891	No protein	-	lncRNA	-	-
ENST00000834362.1	DUXAP9-232	871	No protein	-	lncRNA	-	-
ENST00000834354.1	DUXAP9-224	860	No protein	-	lncRNA	-	-
ENST00000834375.1	DUXAP9-245	860	No protein	-	lncRNA	-	-
ENST00000834360.1	DUXAP9-230	853	No protein	-	lncRNA	-	-
ENST00000834383.1	DUXAP9-253	834	No protein	-	lncRNA	-	-
ENST00000834378.1	DUXAP9-248	831	No protein	-	lncRNA	-	-
ENST00000834414.1	DUXAP9-284	825	No protein	-	lncRNA	-	-
ENST00000834424.1	DUXAP9-294	823	No protein	-	lncRNA	-	-
ENST00000834458.1	DUXAP9-328	823	No protein	-	lncRNA	-	-
ENST00000834389.1	DUXAP9-259	820	No protein	-	lncRNA	-	-
ENST00000834358.1	DUXAP9-228	813	No protein	-	lncRNA	-	-
ENST00000834352.1	DUXAP9-222	811	No protein	-	lncRNA	-	-
ENST00000834427.1	DUXAP9-297	788	No protein	-	lncRNA	-	-
ENST00000834390.1	DUXAP9-260	786	No protein	-	lncRNA	-	-
ENST00000620237.1	DUXAP9-207	770	No protein	-	lncRNA	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000834357.1	DUXAP9-227	764	No protein	-	lncRNA	-	-
ENST00000834388.1	DUXAP9-258	749	No protein	-	lncRNA	-	-
ENST00000834429.1	DUXAP9-299	735	No protein	-	lncRNA	-	-
ENST00000834422.1	DUXAP9-292	726	No protein	-	lncRNA	-	-
ENST00000834348.1	DUXAP9-218	715	No protein	-	lncRNA	-	-
ENST00000834463.1	DUXAP9-333	705	No protein	-	lncRNA	-	-
ENST00000834387.1	DUXAP9-257	696	No protein	-	lncRNA	-	-
ENST00000834467.1	DUXAP9-337	658	No protein	-	lncRNA	-	-
ENST00000834426.1	DUXAP9-296	651	No protein	-	lncRNA	-	-
ENST00000619938.1	DUXAP9-206	642	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000834470.1	DUXAP9-340	638	No protein	-	lncRNA	-	-
ENST00000834391.1	DUXAP9-261	632	No protein	-	lncRNA	-	-
ENST00000834428.1	DUXAP9-298	618	No protein	-	lncRNA	-	-
ENST00000834416.1	DUXAP9-286	609	No protein	-	lncRNA	-	-
ENST00000834469.1	DUXAP9-339	600	No protein	-	lncRNA	-	-
ENST00000834433.1	DUXAP9-303	596	No protein	-	lncRNA	-	-
ENST00000834425.1	DUXAP9-295	590	No protein	-	lncRNA	-	-
ENST00000834466.1	DUXAP9-336	581	No protein	-	lncRNA	-	-
ENST00000834420.1	DUXAP9-290	573	No protein	-	lncRNA	-	-
ENST00000834465.1	DUXAP9-335	563	No protein	-	lncRNA	-	-
ENST00000834434.1	DUXAP9-304	501	No protein	-	lncRNA	-	-
ENST00000834432.1	DUXAP9-302	496	No protein	-	lncRNA	-	-
ENST00000834393.1	DUXAP9-263	472	No protein	-	lncRNA	-	-
ENST00000834418.1	DUXAP9-288	464	No protein	-	lncRNA	-	-
ENST00000834397.1	DUXAP9-267	451	No protein	-	lncRNA	-	-
ENST00000834431.1	DUXAP9-301	435	No protein	-	lncRNA	-	-
ENST00000834468.1	DUXAP9-338	412	No protein	-	lncRNA	-	-
ENST00000834421.1	DUXAP9-291	345	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 7, Coding exons: 0, Transcript length: 1,256 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000547220.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

Transcript: ENST00000547220.6 DUXAP9-202

Summary

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Transcript: ENST00000547220.6 DUXAP9-202

Summary

About Us

Get help

Our sister sites

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