Transcript: ENST00000467796.6

Description

novel transcript

Location

Chromosome 22: 50,756,831-50,799,540 forward strand.

About this transcript

This transcript has 4 exons, is associated with 21005 variant alleles and maps to 740 oligo probes.

Gene

This transcript is a product of gene ENSG00000291064.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000467796.6	-	1678	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000480246.3	-	3109	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000689105.2	-	2162	No protein	-	lncRNA	-	-
ENST00000693416.3	-	2060	No protein	-	lncRNA	-	-
ENST00000701035.1	-	2009	No protein	-	lncRNA	-	-
ENST00000826719.1	-	1571	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000687360.2	-	1565	No protein	-	lncRNA	-	-
ENST00000826737.1	-	1373	No protein	-	lncRNA	-	-
ENST00000826711.1	-	1354	No protein	-	lncRNA	-	-
ENST00000462238.8	-	1323	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000651346.3	-	1316	No protein	-	lncRNA	-	-
ENST00000826717.1	-	1302	No protein	-	lncRNA	-	-
ENST00000687913.3	-	1296	No protein	-	lncRNA	-	-
ENST00000826716.1	-	1251	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826713.1	-	1236	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000701520.2	-	1207	No protein	-	lncRNA	-	-
ENST00000690684.2	-	1163	No protein	-	lncRNA	-	-
ENST00000701706.1	-	1159	No protein	-	lncRNA	-	-
ENST00000700830.1	-	1134	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826743.1	-	1132	No protein	-	lncRNA	-	-
ENST00000496652.6	-	1120	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000826718.1	-	1120	No protein	-	lncRNA	-	-
ENST00000826712.1	-	1117	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826785.1	-	1070	No protein	-	lncRNA	-	-
ENST00000685456.3	-	1054	No protein	-	lncRNA	-	-
ENST00000701742.2	-	1053	No protein	-	lncRNA	-	-
ENST00000826748.1	-	1016	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826714.1	-	1006	No protein	-	lncRNA	-	-
ENST00000826782.1	-	1005	No protein	-	lncRNA	-	-
ENST00000686213.3	-	1001	No protein	-	lncRNA	-	-
ENST00000826715.1	-	998	No protein	-	lncRNA	-	-
ENST00000826736.1	-	984	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826726.1	-	955	No protein	-	lncRNA	-	-
ENST00000826755.1	-	952	No protein	-	lncRNA	-	-
ENST00000826734.1	-	944	No protein	-	lncRNA	-	-
ENST00000463325.7	-	926	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000826724.1	-	912	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000494075.6	-	906	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000423888.8	-	897	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000826727.1	-	895	No protein	-	lncRNA	-	-
ENST00000826728.1	-	890	No protein	-	lncRNA	-	-
ENST00000701765.2	-	889	No protein	-	lncRNA	-	-
ENST00000826735.1	-	889	No protein	-	lncRNA	-	-
ENST00000826786.1	-	885	No protein	-	lncRNA	-	-
ENST00000701498.2	-	872	No protein	-	lncRNA	-	-
ENST00000826740.1	-	871	No protein	-	lncRNA	-	-
ENST00000826749.1	-	869	No protein	-	lncRNA	-	-
ENST00000689655.2	-	851	No protein	-	lncRNA	-	-
ENST00000686022.3	-	851	No protein	-	lncRNA	-	-
ENST00000826763.1	-	846	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000826778.1	-	842	No protein	-	lncRNA	-	-
ENST00000700781.2	-	840	No protein	-	lncRNA	-	-
ENST00000826772.1	-	830	No protein	-	lncRNA	-	-
ENST00000826771.1	-	817	No protein	-	lncRNA	-	-
ENST00000826732.1	-	807	No protein	-	lncRNA	-	-
ENST00000690147.3	-	795	No protein	-	lncRNA	-	-
ENST00000826762.1	-	795	No protein	-	lncRNA	-	-
ENST00000826721.1	-	792	No protein	-	lncRNA	-	-
ENST00000701632.2	-	788	No protein	-	lncRNA	-	-
ENST00000826720.1	-	783	No protein	-	lncRNA	-	-
ENST00000826750.1	-	772	No protein	-	lncRNA	-	-
ENST00000826752.1	-	768	No protein	-	lncRNA	-	-
ENST00000826733.1	-	767	No protein	-	lncRNA	-	-
ENST00000826776.1	-	763	No protein	-	lncRNA	-	-
ENST00000688675.2	-	762	No protein	-	lncRNA	-	-
ENST00000826723.1	-	758	No protein	-	lncRNA	-	-
ENST00000826738.1	-	758	No protein	-	lncRNA	-	-
ENST00000826764.1	-	757	No protein	-	lncRNA	-	-
ENST00000826725.1	-	756	No protein	-	lncRNA	-	-
ENST00000687456.2	-	754	No protein	-	lncRNA	-	-
ENST00000826767.1	-	754	No protein	-	lncRNA	-	-
ENST00000826773.1	-	754	No protein	-	lncRNA	-	-
ENST00000826744.1	-	753	No protein	-	lncRNA	-	-
ENST00000826741.1	-	752	No protein	-	lncRNA	-	-
ENST00000826756.1	-	751	No protein	-	lncRNA	-	-
ENST00000690407.3	-	733	No protein	-	lncRNA	-	-
ENST00000826780.1	-	725	No protein	-	lncRNA	-	-
ENST00000686648.3	-	719	No protein	-	lncRNA	-	-
ENST00000826768.1	-	719	No protein	-	lncRNA	-	-
ENST00000826742.1	-	716	No protein	-	lncRNA	-	-
ENST00000826731.1	-	713	No protein	-	lncRNA	-	-
ENST00000826777.1	-	710	No protein	-	lncRNA	-	-
ENST00000826779.1	-	708	No protein	-	lncRNA	-	-
ENST00000826758.1	-	707	No protein	-	lncRNA	-	-
ENST00000826739.1	-	706	No protein	-	lncRNA	-	-
ENST00000826774.1	-	704	No protein	-	lncRNA	-	-
ENST00000701805.1	-	700	No protein	-	lncRNA	-	-
ENST00000826769.1	-	695	No protein	-	lncRNA	-	-
ENST00000826766.1	-	676	No protein	-	lncRNA	-	-
ENST00000701134.2	-	654	No protein	-	lncRNA	-	-
ENST00000826781.1	-	652	No protein	-	lncRNA	-	-
ENST00000826757.1	-	647	No protein	-	lncRNA	-	-
ENST00000826722.1	-	625	No protein	-	lncRNA	-	-
ENST00000826754.1	-	624	No protein	-	lncRNA	-	-
ENST00000826747.1	-	620	No protein	-	lncRNA	-	-
ENST00000826760.1	-	610	No protein	-	lncRNA	-	-
ENST00000826745.1	-	607	No protein	-	lncRNA	-	-
ENST00000826761.1	-	607	No protein	-	lncRNA	-	-
ENST00000826751.1	-	601	No protein	-	lncRNA	-	-
ENST00000826730.1	-	597	No protein	-	lncRNA	-	-
ENST00000826759.1	-	596	No protein	-	lncRNA	-	-
ENST00000826775.1	-	591	No protein	-	lncRNA	-	-
ENST00000826746.1	-	587	No protein	-	lncRNA	-	-
ENST00000826765.1	-	581	No protein	-	lncRNA	-	-
ENST00000826770.1	-	566	No protein	-	lncRNA	-	-
ENST00000826753.1	-	549	No protein	-	lncRNA	-	-
ENST00000826783.1	-	492	No protein	-	lncRNA	-	-
ENST00000826784.1	-	432	No protein	-	lncRNA	-	-
ENST00000826729.1	-	320	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 1,678 bps,

Transcript Support Level (TSL)

TSL:3

Version

ENST00000467796.6

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Annotation Attributes

overlaps pseudogene [Definitions]

GENCODE primary gene

This transcript is a member of the Gencode Primary gene set.

Transcript: ENST00000467796.6

Summary

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Transcript: ENST00000467796.6

Summary

About Us

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