Transcript: ENST00000435574.3 LINC01354-202

Description

long intergenic non-protein coding RNA 1354 [Source:HGNC Symbol;Acc:HGNC:50581]

Location

Chromosome 1: 234,527,891-234,531,859 reverse strand.

About this transcript

This transcript has 3 exons and maps to 253 oligo probes.

Gene

This transcript is a product of gene ENSG00000231768.3 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000804324.1	LINC01354-207	475	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary,
ENST00000665108.3	LINC01354-206	3238	No protein	-	lncRNA	-	-
ENST00000663964.1	LINC01354-205	3225	No protein	-	lncRNA	-	-
ENST00000653353.2	LINC01354-204	2963	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000435574.3	LINC01354-202	2940	No protein	-	lncRNA	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000653099.1	LINC01354-203	2851	No protein	-	lncRNA	-	-
ENST00000421207.2	LINC01354-201	1295	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000804338.1	LINC01354-221	1153	No protein	-	lncRNA	-	-
ENST00000804326.1	LINC01354-209	1019	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000804329.1	LINC01354-212	1010	No protein	-	lncRNA	-	-
ENST00000804330.1	LINC01354-213	995	No protein	-	lncRNA	-	-
ENST00000804334.1	LINC01354-217	992	No protein	-	lncRNA	-	-
ENST00000804331.1	LINC01354-214	928	No protein	-	lncRNA	-	-
ENST00000804332.1	LINC01354-215	913	No protein	-	lncRNA	-	-
ENST00000804333.1	LINC01354-216	905	No protein	-	lncRNA	-	-
ENST00000804328.1	LINC01354-211	847	No protein	-	lncRNA	-	-
ENST00000804325.1	LINC01354-208	775	No protein	-	lncRNA	-	-
ENST00000804336.1	LINC01354-219	738	No protein	-	lncRNA	-	-
ENST00000804335.1	LINC01354-218	733	No protein	-	lncRNA	-	-
ENST00000804327.1	LINC01354-210	595	No protein	-	lncRNA	-	-
ENST00000804337.1	LINC01354-220	375	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 3, Coding exons: 0, Transcript length: 2,940 bps,

Transcript Support Level (TSL)

TSL:1

Version

ENST00000435574.3

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000435574.3 LINC01354-202

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Transcript: ENST00000435574.3 LINC01354-202

Summary

About Us

Get help

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