Transcript: ENST00000414404.2 LINC01829-201

Description

long intergenic non-protein coding RNA 1829 [Source:HGNC Symbol;Acc:HGNC:52635]

Location

Chromosome 2: 67,175,148-67,215,399 reverse strand.

About this transcript

This transcript has 5 exons and maps to 209 oligo probes.

Gene

This transcript is a product of gene ENSG00000236780.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000821349.1	LINC01829-206	1296	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, GENCODE Primary represents a minimal set that contains MANE Select, MANE Plus Clinical and Ensembl Canonical transcripts and transcripts containing any conserved exons and common alternative splicing events (including exons skips) that are absent from the MANE and Ensembl Canonical transcripts for protein-coding genes. Other biotypes will have the GENCODE Primary flag added to the Ensembl Canonical transcript and for lncRNA genes only this will be the transcripts with the longest genomic span.GENCODE Primary, A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821369.1	LINC01829-226	2745	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000433133.5	LINC01829-202	2100	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000821370.1	LINC01829-227	1727	No protein	-	lncRNA	-	-
ENST00000821363.1	LINC01829-220	1432	No protein	-	lncRNA	-	-
ENST00000821355.1	LINC01829-212	1328	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000652561.2	LINC01829-204	1280	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821350.1	LINC01829-207	1275	No protein	-	lncRNA	-	-
ENST00000657304.1	LINC01829-205	1230	No protein	-	lncRNA	-	-
ENST00000821354.1	LINC01829-211	1226	No protein	-	lncRNA	-	-
ENST00000414404.2	LINC01829-201	968	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000821364.1	LINC01829-221	903	No protein	-	lncRNA	-	-
ENST00000821361.1	LINC01829-218	900	No protein	-	lncRNA	-	-
ENST00000821366.1	LINC01829-223	891	No protein	-	lncRNA	-	-
ENST00000821360.1	LINC01829-217	878	No protein	-	lncRNA	-	-
ENST00000821356.1	LINC01829-213	840	No protein	-	lncRNA	-	-
ENST00000821367.1	LINC01829-224	832	No protein	-	lncRNA	-	-
ENST00000821351.1	LINC01829-208	804	No protein	-	lncRNA	-	-
ENST00000821353.1	LINC01829-210	798	No protein	-	lncRNA	-	-
ENST00000821357.1	LINC01829-214	788	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821358.1	LINC01829-215	785	No protein	-	lncRNA	-	-
ENST00000821359.1	LINC01829-216	753	No protein	-	lncRNA	-	-
ENST00000447453.1	LINC01829-203	750	No protein	-	lncRNA	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000821365.1	LINC01829-222	676	No protein	-	lncRNA	-	-
ENST00000821375.1	LINC01829-232	670	No protein	-	lncRNA	-	-
ENST00000821352.1	LINC01829-209	670	No protein	-	lncRNA	-	-
ENST00000821362.1	LINC01829-219	664	No protein	-	lncRNA	-	-
ENST00000821373.1	LINC01829-230	517	No protein	-	lncRNA	-	-
ENST00000821368.1	LINC01829-225	510	No protein	-	lncRNA	-	-
ENST00000821371.1	LINC01829-228	457	No protein	-	lncRNA	-	A subset of the GENCODE transcript set, containing only 5' and 3' complete transcripts at protein-coding genes.GENCODE Basic,
ENST00000821372.1	LINC01829-229	350	No protein	-	lncRNA	-	-
ENST00000821374.1	LINC01829-231	338	No protein	-	lncRNA	-	-

Summary

Statistics

Exons: 5, Coding exons: 0, Transcript length: 968 bps,

Transcript Support Level (TSL)

TSL:2

Version

ENST00000414404.2

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

Transcript: ENST00000414404.2 LINC01829-201

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Transcript: ENST00000414404.2 LINC01829-201

Summary

About Us

Get help

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