Description

tsukushi, small leucine rich proteoglycan [Source:HGNC Symbol;Acc:HGNC:28850]

Synonyms

E2IG4, LRRC54, TSK

Location
About this transcript

This transcript has 2 exons, is annotated with 17 domains and features, is associated with 144 variations and maps to 19 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
TSKU-004ENST000005278813554353aaENSP00000434847
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8246A0A024R5J8 Q8WUA8 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

TSKU-001ENST000003330902712353aaENSP00000332668
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8246A0A024R5J8 Q8WUA8 NM_015516
NP_056331
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

TSKU-201ENST000006129302666353aaENSP00000482145
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8246A0A024R5J8 Q8WUA8 NM_001258210
NP_001245139
TSL:4

Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

TSKU-002ENST00000533752643150aaENSP00000435133
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PLG7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TSKU-003ENST00000525167542105aaENSP00000434873
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PN12 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSP00000332668.4

Transcript-based displays