Description

chromosome 20 open reading frame 27 [Source:HGNC Symbol;Acc:HGNC:15873]

Synonyms

FLJ20550

Location
About this transcript

This transcript has 6 exons, is associated with 80 variations and maps to 24 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
C20orf27-001ENST000003797721886174aaENSP00000369097
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58763Q9GZN8 NM_001258429
NP_001245358
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

C20orf27-005ENST000003996721734174aaENSP00000382580
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58763Q9GZN8 NM_001258430
NP_001245359
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

C20orf27-002ENST000002171951302199aaENSP00000217195
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS33436Q9GZN8 NM_001039140
NP_001034229
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
C20orf27-004ENST00000399683933127aaENSP00000382591
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BYU9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSP00000217195.8

Transcript-based displays