Description

apolipoprotein B [Source:HGNC Symbol;Acc:HGNC:603]

Location
About this transcript

This transcript has 29 exons, is annotated with 25 domains and features, is associated with 2137 variations and maps to 15 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
APOB-001ENST00000233242141214563aaENSP00000233242
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS1703P04114 NM_000384
NP_000375
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
APOB-201ENST00000616098139914344aaENSP00000477990
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087WTM7 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
APOB-002ENST000003992563128828aaENSP00000382200
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A8MUN2 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Protein domains for ENSP00000233242.1

Transcript-based displays