Description

jade family PHD finger 1 [Source:HGNC Symbol;Acc:HGNC:30027]

Synonyms

JADE-1, PHF17

Gene

This transcript is a product of gene ENSG00000077684

This gene has 14 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
JADE1-201ENST000002263195772842 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34062D6RBB3 D6RC05 D6RCS1
D6RFK0 D6RGE7 JADE1-201
Q6IE81
NM_199320
NP_955352
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI2APPRIS candidate principal isoform (longest CCDS) [01-09-2014]
Glossary entry for APPRIS
APPRIS website
JADE1-203ENST000006111405648842 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34062D6RBB3 D6RC05 D6RCS1
D6RFK0 D6RGE7 JADE1-203
NM_001287443
NP_001274372
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI2APPRIS candidate principal isoform (longest CCDS) [01-09-2014]
Glossary entry for APPRIS
APPRIS website
JADE1-202ENST000006109195644842 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34062D6RBB3 D6RC05 D6RCS1
D6RFK0 D6RGE7 JADE1-202
NM_001287442
NP_001274371
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI2APPRIS candidate principal isoform (longest CCDS) [01-09-2014]
Glossary entry for APPRIS
APPRIS website
JADE1-003ENST000004523285544830 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75191JADE1-003 Q6IE81 NM_001287437
NP_001274366
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
JADE1-001ENST000004135434012509 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS47134D6RBB3 D6RC05 D6RCS1
D6RFK0 D6RGE7 JADE1-001
Q6IE81
NM_001287441
NP_001274370
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
JADE1-002ENST000005116473560509 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS47134D6RBB3 D6RC05 D6RCS1
D6RFK0 D6RGE7 JADE1-002
Q6IE81
NM_024900
NP_079176
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CIAPPRIS candidate principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
JADE1-004ENST000005129603000842 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS34062D6RBB3 D6RC05 D6RCS1
D6RFK0 D6RGE7 JADE1-004
Q6IE81
NM_001287439
NM_001287440
NP_001274368
NP_001274369
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI2APPRIS candidate principal isoform (longest CCDS) [01-09-2014]
Glossary entry for APPRIS
APPRIS website
JADE1-007ENST00000503785584129 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RC05 D6RCS1 JADE1-007
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

JADE1-005ENST00000504089567136 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBB3 D6RC05 D6RCS1
D6RFK0 JADE1-005
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

JADE1-006ENST00000510308564143 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBB3 D6RC05 D6RCS1
D6RFK0 D6RGE7 JADE1-006
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

JADE1-009ENST00000507833552132 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RBB3 D6RC05 D6RCS1
JADE1-009
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

JADE1-008ENST0000051474053217 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-JADE1-008 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

JADE1-010ENST00000508997504119 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-D6RCS1 JADE1-010 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

JADE1-011ENST0000051192552949 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-D6RAS5 JADE1-011 -TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSP00000226319.6

Transcript-based displays