Description

protocadherin gamma subfamily A, 1 [Source:HGNC Symbol;Acc:HGNC:8696]

Synonyms

PCDH-GAMMA-A1

About this transcript

This transcript has 4 exons, is annotated with 37 domains and features, is associated with 1290 variations and maps to 50 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PCDHGA1-001ENST000005174174604931aaENSP00000431083
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS54922Q9Y5H4 NM_018912
NP_061735
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PCDHGA1-002ENST000003781054069823aaENSP00000367345
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9Y5H4 NM_031993
NP_114382
TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Protein domains for ENSP00000431083.1

Transcript-based displays