Description

leucine rich repeat containing 20 [Source:HGNC Symbol;Acc:HGNC:23421]

Synonyms

FLJ10751, FLJ10844

Location
About this transcript

This transcript has 4 exons, is annotated with 1 domain and feature, is associated with 66 variations and maps to 11 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
LRRC20-004ENST000003557903414184aaENSP00000348043
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7302A0A024QZM2 Q8TCA0 NM_207119
NP_997002
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
LRRC20-001ENST000003732243095184aaENSP00000362321
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7302A0A024QZM2 Q8TCA0 NM_001278211
NM_001278212
NP_001265140
NP_001265141
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
LRRC20-201ENST000003950102959115aaENSP00000378457
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73145A0A0A0MS58 NM_001278214
NP_001265143
TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LRRC20-002ENST000003581412924134aaENSP00000350860
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7301A0A024QZL5 Q8TCA0 NM_018239
NP_060709
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LRRC20-005ENST000003576312906128aaENSP00000350255
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7300A0A024QZR0 Q8TCA0 NM_018205
NP_060675
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

LRRC20-202ENST000003950112903134aaENSP00000378458
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS7301A0A024QZL5 Q8TCA0 NM_001278213
NP_001265142
TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
LRRC20-003ENST00000446961663175aaENSP00000413745
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-X6RK58 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS ALT1APPRIS candidate principal isoform that is conserved in at least three tested non-primate species
Glossary entry for APPRIS
APPRIS website

Protein domains for ENSP00000350255.2

Transcript-based displays