Description

5-hydroxytryptamine (serotonin) receptor 3A, ionotropic [Source:HGNC Symbol;Acc:HGNC:5297]

Synonyms

5-HT3A, 5-HT3R, HTR3

Gene

This transcript is a product of gene ENSG00000166736

This gene has 7 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
HTR3A-201ENST000003555562331516 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8366B3VRG0 B3VRG5 B3VRH0
B3VRH5 B3VRI0 B3VRI5
B3VRJ5 B3VRK0 P46098
NM_213621
NP_998786
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HTR3A-202ENST000003754982235484 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8365B3VRG0 B3VRG5 B3VRH0
B3VRH5 B3VRI0 B3VRI5
B3VRJ5 B3VRK0 P46098
Q9UEP2
NM_000869
NP_000860
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HTR3A-003ENST000002999611994463 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS53710B3VRG0 B3VRG5 B3VRH0
B3VRH5 B3VRI0 B3VRI5
B3VRJ5 P46098 Q9UEP2
NM_001161772
NP_001155244
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HTR3A-001ENST000005040302432478 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B3VRG0 B3VRG5 B3VRH0
B3VRH5 B3VRI0 B3VRI5
B3VRJ5 B3VRK0 P46098
Q9UEP2
-TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
HTR3A-002ENST000005068412221510 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B3VRG0 B3VRG5 B3VRH0
B3VRH5 B3VRI0 B3VRI5
B3VRJ5 B3VRK0 P46098
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HTR3A-004ENST000005108491385238 aa
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-A0A024R3I9 B3VRI0 B3VRI5
B3VRJ5 B3VRK0
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HTR3A-005ENST00000502622906No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSP00000299961.4

Transcript-based displays