Description

vascular cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:12663]

Synonyms

CD106

Gene

This transcript is a product of gene ENSG00000162692

This gene has 5 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
VCAM1-001ENST000002947283083739 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS773F2YYR6 F8UU18 F8UV74
G0ZFQ0 G0ZI12 P19320
Q68DC4
NM_001078
NP_001069
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
VCAM1-002ENST000003476522812647 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS774F8UU18 F8UV74 G0ZFQ0
G0ZI12 P19320 Q68DC4
NM_080682
NP_542413
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
VCAM1-004ENST000003701192483677 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS55617F2YYR6 F8UU18 F8UV74
G0ZFQ0 P19320 Q68DC4
NM_001199834
NP_001186763
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
VCAM1-003ENST000003701152475540 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PDD2 F8UV74 G0ZFQ0
G0ZI12 Q68DC4
-TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
VCAM1-005ENST000006036793865No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSP00000359137.3

Transcript-based displays