Description

autophagy related 4C, cysteine peptidase [Source:HGNC Symbol;Acc:HGNC:16040]

Synonyms

APG4C, AUTL1, AUTL3, FLJ14867

Location
About this transcript

This transcript has 11 exons, is annotated with 1 domain and feature, is associated with 208 variations and maps to 35 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
ATG4C-001ENST000003178682938458aaENSP00000322159
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS623Q96DT6 NM_032852
NP_116241
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

ATG4C-002ENST000003711202890458aaENSP00000360161
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS623Q96DT6 NM_178221
NP_835739
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

ATG4C-004ENST00000371118665189aaENSP00000360159
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A6NGQ4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ATG4C-003ENST00000443289603151aaENSP00000396614
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JC51 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ATG4C-005ENST00000414558464110aaENSP00000391820
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H7BZW5 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSP00000360161.3

Transcript-based displays