Description

phospholipid scramblase 4 [Source:HGNC Symbol;Acc:HGNC:16497]

Gene

This transcript is a product of gene ENSG00000114698

This gene has 11 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
PLSCR4-001ENST000003549523303329 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3133C9J3P9 C9J664 C9J6E1
C9J916 D3DNG6 Q9NRQ2
NM_020353
NP_065086
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
PLSCR4-002ENST000004335932839224 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS54651Q9NRQ2 NM_001177304
NP_001170775
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PLSCR4-004ENST000004465741442329 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3133C9J3P9 C9J664 C9J6E1
C9J916 D3DNG6 Q9NRQ2
NM_001128305
NP_001121777
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
PLSCR4-003ENST000004933821375329 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3133C9J3P9 C9J664 C9J6E1
C9J916 D3DNG6 Q9NRQ2
NM_001128304
NP_001121776
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
PLSCR4-201ENST000003830833033239 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3P9 C9JNW2 E9PHR9
NM_001128306
NP_001121778
TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PLSCR4-005ENST000004603501054262 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3P9 C9J664 C9J6E1
C9J916
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PLSCR4-007ENST00000476202814208 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3P9 C9J664 C9J916
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PLSCR4-008ENST00000481701683142 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3P9 C9J664 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PLSCR4-006ENST00000460885609147 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3P9 C9JNW2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PLSCR4-010ENST0000049862559398 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J3P9 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PLSCR4-011ENST00000475019807No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSP00000415605.2

Transcript-based displays