Description

hepatocyte nuclear factor 4, alpha [Source:HGNC Symbol;Acc:HGNC:5024]

Synonyms

HNF4, MODY, MODY1, NR2A1, TCF14

Location
About this transcript

This transcript has 10 exons, is annotated with 27 domains and features, is associated with 489 variations and maps to 24 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
HNF4A-002ENST000003160996445474aaENSP00000312987
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS13330F1D8T1 P41235 NM_000457
NM_001258355
NP_000448
NP_001245284
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

HNF4A-201ENST000006195504763449aaENSP00000481331
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS74728A0A087WXV4 NM_001287182
NM_001287183
NP_001274111
NP_001274112
TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HNF4A-006ENST000004156912302464aaENSP00000412111
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46605F1D8S2 P41235 NM_178849
NP_849180
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HNF4A-004ENST000004435981603417aaENSP00000410911
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS13331P41235 NM_178850
NP_849181
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HNF4A-001ENST000003166731470452aaENSP00000315180
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS42876F1D8T0 P41235 NM_175914
NP_787110
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HNF4A-005ENST000004572321339442aaENSP00000396216
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS46604P41235 NM_001030003
NP_001025174
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HNF4A-007ENST000006097951192395aaENSP00000476609
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS68131P41235 NM_001030004
NM_001287184
NP_001025175
NP_001274113
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
HNF4A-008ENST00000609262540103aaENSP00000476310
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B9VVT8 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

HNF4A-003ENST000003729203340107aaENSP00000362011
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-F8WBS7 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Protein domains for ENSP00000315180.4

Transcript-based displays