Description

protocadherin gamma subfamily A, 2 [Source:HGNC Symbol;Acc:HGNC:8700]

Synonyms

PCDH-GAMMA-A2

About this transcript

This transcript has 4 exons, is annotated with 36 domains and features, is associated with 1386 variations and maps to 47 oligo probes.

Gene
NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PCDHGA2-001ENST000003945764605932aaENSP00000378077
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS47289Q9Y5H1 NM_018915
NP_061738
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P2

PRINCIPAL2 - APPRIS candidate principal isoform (CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PCDHGA2-002ENST000005283304543823aaENSP00000483020
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9Y5H1 NM_032009
NP_114398
TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Protein domains for ENSP00000378077.2

Transcript-based displays