Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC02542 ENSG00000226453

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Description

long intergenic non-protein coding RNA 2542 [Source:HGNC Symbol;Acc:HGNC:53576]

Location

Chromosome 6: 81,844,602-82,169,391 reverse strand.

GRCh38:CM000668.2

About this gene

This gene has 12 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000663543.1	LINC02542-205	1662	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000665153.1	LINC02542-206	1611	No protein	-	lncRNA		-	-
ENST00000668266.1	LINC02542-209	1606	No protein	-	lncRNA		-	-
ENST00000666226.1	LINC02542-207	1583	No protein	-	lncRNA		-	-
ENST00000667666.1	LINC02542-208	1564	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000660637.1	LINC02542-204	1529	No protein	-	lncRNA		-	-
ENST00000658218.1	LINC02542-202	1510	No protein	-	lncRNA		-	-
ENST00000418567.2	LINC02542-201	1501	No protein	-	lncRNA		-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000668303.1	LINC02542-210	1498	No protein	-	lncRNA		-	-
ENST00000660534.2	LINC02542-203	1421	No protein	-	lncRNA		-	-
ENST00000702318.1	LINC02542-212	598	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000684960.2	LINC02542-211	547	No protein	-	lncRNA		-	-

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Summary

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