Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

Configure this page

Share this page

Bookmark this page

.

Gene: LINC00393 ENSG00000224853

.

Description

long intergenic non-protein coding RNA 393 [Source:HGNC Symbol;Acc:HGNC:42721]

Location

Chromosome 13: 73,413,473-73,661,891 reverse strand.

GRCh38:CM000675.2

About this gene

This gene has 10 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000443621.1	LINC00393-201	282	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000650209.1	LINC00393-210	1542	No protein	-	lncRNA		-	-
ENST00000648624.1	LINC00393-204	1499	No protein	-	lncRNA		-	-
ENST00000649189.1	LINC00393-206	1389	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000648903.1	LINC00393-205	1344	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000649254.1	LINC00393-207	1148	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000647940.1	LINC00393-203	1069	No protein	-	lncRNA		-	-
ENST00000649507.2	LINC00393-208	982	No protein	-	lncRNA		-	-
ENST00000452852.2	LINC00393-202	486	No protein	-	lncRNA		-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000649860.1	LINC00393-209	335	No protein	-	lncRNA		-	-

.

Summary

.

.