Description

surfactant protein A2 [Source:HGNC Symbol;Acc:HGNC:10799]

Synonyms

COLEC5, SP-A2

Location
INSDC coordinates

chromosome:GRCh38:CM000672.2:79555852:79560397:1

About this gene

This gene has 4 transcripts (splice variants), 67 orthologues, 5 paralogues, is a member of 1 Ensembl protein family and is associated with 1 phenotype.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SFTPA2-001ENST000003723252189248aaENSP00000361400
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS41540Q8IWL1 NM_001098668
NP_001092138
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SFTPA2-201ENST00000372327815248aaENSP00000361402
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS41540Q8IWL1 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SFTPA2-003ENST00000417041726158aaENSP00000397375
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-X6REF7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SFTPA2-006ENST0000049204964498aaENSP00000473275
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-R4GMN3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays