Description

activating transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:790]

Location
INSDC coordinates

chromosome:GRCh38:CM000681.2:49928702:49933935:1

Transcripts



This gene has 5 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
ATF5-001ENST000004237772069282 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS12789A0A024QZG3 M0QZD2 M0R040
Q9Y2D1
NM_001193646
NP_001180575
NP_001277675
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
ATF5-002ENST000005951251637282 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS12789A0A024QZG3 M0QZD2 M0R040
Q9Y2D1
NM_012068
NP_001277675
NP_036200
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
ATF5-005ENST00000597227828122 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0R040 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ATF5-006ENST00000596658722130 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0QZD2 M0R040 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

ATF5-004ENST0000060033668288 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-M0R0D5 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays