Description

bone marrow stromal cell antigen 1 [Source:HGNC Symbol;Acc:HGNC:1118]

Synonyms

CD157

Location
INSDC coordinates

chromosome:GRCh38:CM000666.2:15702950:15738313:1

About this gene

This gene has 5 transcripts (splice variants), 78 orthologues, 1 paralogue, is a member of 1 Ensembl protein family and is associated with 50 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
BST1-001ENST000002650161480318aaENSP00000265016
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3416Q10588 NM_004334
NP_004325
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
BST1-002ENST000003823461993333aaENSP00000371783
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A6NC48 -TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website
BST1-005ENST000005144451002155aaENSP00000420925
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y8G4 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BST1-003ENST0000051498980197aaENSP00000424761
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y9Q9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

BST1-004ENST00000505785770186aaENSP00000423357
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0Y984 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays