Description

LIM homeobox 5 [Source:HGNC Symbol;Acc:HGNC:14216]

INSDC coordinates

chromosome:GRCh38:CM000674.2:113462034:113472280:1

About this gene

This gene has 2 transcripts (splice variants), 47 orthologues, 11 paralogues, is a member of 1 Ensembl protein family and is associated with 63 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
LHX5-001ENST000002617312939402aaENSP00000261731
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS9171Q9H2C1 NM_022363
NP_071758
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

LHX5-002ENST00000557836713No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays