Description

protocadherin gamma subfamily A, 12 [Source:HGNC Symbol;Acc:HGNC:8699]

Synonyms

CDH21, FIB3, KIAA0588, PCDH-GAMMA-A12

INSDC coordinates

chromosome:GRCh38:CM000667.2:141430589:141512979:1

About this gene

This gene has 2 transcripts (splice variants), 146 orthologues, 36 paralogues, is a member of 1 Ensembl protein family and is associated with 216 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PCDHGA12-001ENST000002520854747932aaENSP00000252085
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS4260O60330 NM_003735
NP_003726
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

PCDHGA12-002ENST000006133142634820aaENSP00000481438
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS75346O60330 NM_032094
NP_115265
TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays