Description

protocadherin alpha 1 [Source:HGNC Symbol;Acc:HGNC:8663]

INSDC coordinates

chromosome:GRCh38:CM000667.2:140786136:141012347:1

About this gene

This gene has 3 transcripts (splice variants), 124 orthologues, 26 paralogues, is a member of 1 Ensembl protein family and is associated with 317 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PCDHA1-002ENST000005041205263950aaENSP00000420840
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS54913Q9Y5I3 NM_018900
NP_061723
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI2APPRIS candidate principal isoform (CCDS)
Glossary entry for APPRIS
APPRIS website
PCDHA1-001ENST000003946332204686aaENSP00000378129
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS54912Q9Y5I3 NM_031411
NP_113599
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
PCDHA1-003ENST000003781332726807aaENSP00000367373
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9Y5I3 NM_031410
NP_113598
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species
Glossary entry for APPRIS
APPRIS website

Gene-based displays