Description

collagen, type XIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2190]

Synonyms

Location
INSDC coordinates

chromosome:GRCh38:CM000672.2:69801931:69964275:1

Transcripts

This gene has 14 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDLengthProteinBiotypeCCDSUniProtRefSeqFlags
COL13A1-001ENST000003989783093 bp717 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44419Q5TAT6 Q9UP45 NM_001130103
NP_001123575
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL13A1-002ENST000003545473027 bp695 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44424Q5TAT6 Q9UP45 NM_080801
NP_542991
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL13A1-011ENST000005202672276 bp645 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44427E7ES56 Q5TAT6 Q9UP45
NM_080798
NP_542988
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL13A1-014ENST000005221652061 bp686 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44425Q5TAT6 Q9UP45 NM_080800
NP_542990
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL13A1-013ENST000005177132007 bp668 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44423Q5TAT6 Q9UP45 NM_080802
NP_542992
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL13A1-015ENST000005201331833 bp610 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS44428Q5TAT6 Q9UP45 NM_080805
NP_542995
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL13A1-004ENST000003578112991 bp683 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q5TAT6 Q9UP45 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL13A1-201ENST000003989692267 bp642 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q9UP45 -GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL13A1-006ENST000003989751057 bp247 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
COL13A1-008ENST00000456019749 bp174 aa (view)
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
---CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.
COL13A1-003ENST000004797332934 bp582 aa (view)
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-E7EX21 Q9UP45 -
COL13A1-007ENST00000484990360 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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COL13A1-012ENST00000518052290 bp No protein product
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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COL13A1-009ENST000004782192586 bp No protein product
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays