Description

dachsous cadherin-related 2 [Source:HGNC Symbol;Acc:HGNC:23111]

Synonyms

CDH27, CDHJ, CDHR7, FLJ20047, PCDH23, PCDHJ

INSDC coordinates

chromosome:GRCh38:CM000666.2:154232037:154491716:1

Transcripts



This gene has 8 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
DCHS2-201ENST0000062360789122916 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3785B3KT73 NM_017639
NP_060109
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS CI1APPRIS candidate principal isoform (longest coding sequence) [01-09-2014]
Glossary entry for APPRIS
APPRIS website
DCHS2-002ENST0000033945250641369 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS47150Q6V1P9 NM_001142552
NP_001136024
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
DCHS2-001ENST00000357232112492916 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B3KT73 Q6V1P9 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

APPRIS CI1APPRIS candidate principal isoform (longest coding sequence) [01-09-2014]
Glossary entry for APPRIS
APPRIS website
DCHS2-005ENST000004563412109No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

DCHS2-004ENST00000507542857No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

DCHS2-003ENST00000504580569No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:4

TSL4:The best supporting EST for this transcript is flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

DCHS2-007ENST00000623568512No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
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DCHS2-006ENST000006249832280No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
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Gene-based displays