Description

sarcalumenin [Source:HGNC Symbol;Acc:HGNC:11295]

Location
INSDC coordinates

chromosome:GRCh38:CM000678.2:4189374:4242080:1

About this gene

This gene has 3 transcripts (splice variants), 69 orthologues, 10 paralogues, is a member of 1 Ensembl protein family and is associated with 90 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SRL-001ENST000003996094214473aaENSP00000382518
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS42113Q86TD4 NM_001098814
NP_001092284
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
SRL-004ENST000005379961814431aaENSP00000440350
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-B4DYT9 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SRL-002ENST000005721115587486aaENSP00000461179
 
Nonsense mediated decayTranscript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins.
-I3L4D6 -TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays