Description

gem (nuclear organelle) associated protein 4 [Source:HGNC Symbol;Acc:HGNC:15717]

Synonyms

DKFZP434B131, DKFZP434D174, HC56, HCAP1, HHRF-1, p97

Location
INSDC coordinates

chromosome:GRCh38:CM000679.2:744414:753999:1

About this gene

This gene has 7 transcripts (splice variants), 57 orthologues, is a member of 2 Ensembl protein families and is associated with 102 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
GEMIN4-001ENST0000031900437481058aaENSP00000321706
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS45559P57678 NM_015721
NP_056536
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
GEMIN4-002ENST0000057677847291047aaENSP00000459565
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L2C7 -TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
GEMIN4-003ENST000004372691182184aaENSP00000392460
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7EN12 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
GEMIN4-005ENST000005703641048271aaENSP00000461103
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L4A4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GEMIN4-007ENST000005734821015296aaENSP00000460286
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L399 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GEMIN4-006ENST0000057495867370aaENSP00000458896
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1J7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GEMIN4-004ENST00000576383633189aaENSP00000461368
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L4M4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays