Description

gem (nuclear organelle) associated protein 4 [Source:HGNC Symbol;Acc:HGNC:15717]

Synonyms

DKFZP434B131, DKFZP434D174, HC56, HCAP1, HHRF-1, p97

Location
INSDC coordinates

chromosome:GRCh38:CM000679.2:744414:753999:1

About this gene

This gene has 7 transcripts (splice variants), 57 orthologues, is a member of 2 Ensembl protein families and is associated with 103 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
GEMIN4-001ENST0000031900437481058aaENSP00000321706
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS45559P57678 NM_015721
NP_056536
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

GEMIN4-002ENST0000057677847291047aaENSP00000459565
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L2C7 -TSL:NA

Transcript Support Level Not Analysed. Pseudogenes, single exon transcripts, HLA, T-cell receptor and Ig transcripts are not analysed and therefore not given any of the TSL categories.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
GEMIN4-003ENST000004372691182184aaENSP00000392460
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7EN12 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
GEMIN4-005ENST000005703641048271aaENSP00000461103
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L4A4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GEMIN4-007ENST000005734821015296aaENSP00000460286
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L399 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GEMIN4-006ENST0000057495867370aaENSP00000458896
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L1J7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GEMIN4-004ENST00000576383633189aaENSP00000461368
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-I3L4M4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays