Description

sorting nexin 18 [Source:HGNC Symbol;Acc:HGNC:19245]

Synonyms

SH3PX2, SH3PXD3B, SNAG1

Location
INSDC coordinates

chromosome:GRCh38:CM000667.2:54517759:54546585:1

Transcripts



This gene has 3 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
SNX18-201ENST000003430175375591 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS54851Q96RF0 NM_001145427
NP_001138899
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SNX18-002ENST000003814105218624 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS43317Q96RF0 NM_001102575
NP_001096045
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
SNX18-001ENST000003262772152628 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3962Q96RF0 NM_052870
NP_443102
TSL:NA

TSL:NA:The transcript was not analyzed for one of the following reasons:

  • Pseudogene annotation, including transcribed pseudogenes
  • Human leukocyte antigen (HLA) transcript
  • Immunoglobin gene transcript
  • T-cell receptor transcript
  • Single-exon transcript (will be included in a future version)

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays