Description

TGFB-induced factor homeobox 1 [Source:HGNC Symbol;Acc:HGNC:11776]

Synonyms

HPE4, TGIF

Location
INSDC coordinates

chromosome:GRCh38:CM000680.2:3411608:3459978:1

Transcripts



This gene has 23 transcripts (splice variants) Show transcript tableHide transcript table

NameTranscript IDbpProteinBiotypeCCDSUniProtRefSeqFlags
TGIF1-001ENST000006180013030286 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11832F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VZH2
NM_173207
NP_001265611
NP_775299
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGIF1-004ENST000004720422214252 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11835F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VZH2 Q15583
-TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGIF1-002ENST000003438202076272 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11833F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VYL4 F8VZH2 Q15583
NM_001278684
NM_003244
NM_173208
NP_001265613
NP_003235
NP_775300
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
TGIF1-003ENST000003305131980401 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11834F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VZH2 Q15583
NM_170695
NP_733796
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGIF1-203ENST000004053851689252 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11835F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VZH2 Q15583
NM_173209
NP_775301
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGIF1-202ENST000004014491670252 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11835F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VZH2 Q15583
NM_174886
NP_777480
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGIF1-006ENST000004075011585272 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11833F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VYL4 F8VZH2 Q15583
-TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PIAPPRIS principal isoform [01-09-2014]
Glossary entry for APPRIS
APPRIS website
TGIF1-204ENST000005484891536252 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11835F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VZH2 Q15583
NM_001278686
NP_001265615
TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGIF1-201ENST000004001671352252 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11835F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VZH2 Q15583
NM_173211
NP_775303
TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGIF1-016ENST000003451331088252 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11835F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VZH2 Q15583
-TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGIF1-015ENST00000551541990252 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11835F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VZH2 Q15583
NM_173210
NP_775302
TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGIF1-008ENST000005523831267168 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VW34 F8VWK5 F8VX54
F8VXG3 F8VZH2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TGIF1-007ENST000005514021089132 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8W1J9 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGIF1-017ENST00000549546820246 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VUY0 F8VVS9 F8VW34
F8VWK5 F8VX54 F8VXG3
F8VZH2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TGIF1-011ENST00000549780801219 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VUY0 F8VW34 F8VWK5
F8VX54 F8VXG3 F8VZH2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TGIF1-020ENST0000057754372984 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-J3KS32 -TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TGIF1-010ENST00000550958706131 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VW34 F8VXG3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TGIF1-019ENST00000551333564138 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VW34 F8VX54 F8VXG3
F8VZH2
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TGIF1-012ENST0000054925356392 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VXG3 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TGIF1-005ENST00000546979554118 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VXG3 F8VYL4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TGIF1-018ENST00000549468526133 aa
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F8VW34 F8VX54 F8VXG3
-CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TGIF1-013ENST00000551557319No protein
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TGIF1-009ENST00000547233755No protein
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays