Description

vascular endothelial growth factor B [Source:HGNC Symbol;Acc:HGNC:12681]

Synonyms

VEGFL, VRF

Location
INSDC coordinates

chromosome:GRCh38:CM000673.2:64234538:64238793:1

About this gene

This gene has 4 transcripts (splice variants), 38 orthologues, 2 paralogues, is a member of 2 Ensembl protein families and is associated with 27 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
VEGFB-001ENST000003094221380207aaENSP00000311127
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8062P49765 Q7LAP4 NM_003377
NP_003368
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI3APPRIS candidate principal isoform (earliest CCDS)
Glossary entry for APPRIS
APPRIS website
VEGFB-003ENST00000426086979188aaENSP00000401550
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS58144P49765 NM_001243733
NP_001230662
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1APPRIS candidate principal isoform that is conserved in at least three tested non-primate species
Glossary entry for APPRIS
APPRIS website
VEGFB-004ENST0000054168122532aaENSP00000442526
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YGB6 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

VEGFB-005ENST00000543462663No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays