Description

collagen, type VIII, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2216]

Synonyms

FECD, FECD1, PPCD, PPCD2

Location
INSDC coordinates

chromosome:GRCh38:CM000663.2:36095236:36125220:1

About this gene

This gene has 4 transcripts (splice variants), 52 orthologues, 16 paralogues, is a member of 1 Ensembl protein family and is associated with 4 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
COL8A2-003ENST000003977994670703aaENSP00000380901
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS403P25067 -TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

COL8A2-001ENST000003031434452703aaENSP00000305913
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS403P25067 NM_005202
NP_005193
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

COL8A2-002ENST000004817852036638aaENSP00000436433
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS72756E9PP49 NM_001294347
NP_001281276
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
COL8A2-201ENST000006159901353427aaENSP00000484406
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-Q4VAQ0 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).

Gene-based displays