Description

NK3 homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7838]

Synonyms

BAPX2, NKX3.1, NKX3A

Location
INSDC coordinates

chromosome:GRCh38:CM000670.2:23678693:23682927:1

About this gene

This gene has 2 transcripts (splice variants), 56 orthologues, 17 paralogues, is a member of 1 Ensembl protein family and is associated with 35 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
NKX3-1-001ENST000003808713271234aaENSP00000370253
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS6042Q99801 NM_006167
NP_006158
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P3

PRINCIPAL3 - APPRIS candidate principal isoform (earliest CCDS).

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

NKX3-1-004ENST00000523261713159aaENSP00000429729
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS59095Q99801 NM_001256339
NP_001243268
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT2

ALTERNATIVE2 - APPRIS candidate principal isoform that appears to be conserved in fewer than three tested non-primate species.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

Gene-based displays