Description

spalt-like transcription factor 2 [Source:HGNC Symbol;Acc:HGNC:10526]

Synonyms

Hsal2, KIAA0360, ZNF795

Location
INSDC coordinates

chromosome:GRCh38:CM000676.2:21521081:21537216:1

About this gene

This gene has 7 transcripts (splice variants), 54 orthologues, 4 paralogues, is a member of 1 Ensembl protein family and is associated with 130 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
SALL2-001ENST0000061434249421007aaENSP00000483562
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS32045Q9Y467 NM_005407
NP_005398
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

SALL2-006ENST000004508793178906aaENSP00000396773
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E7EW59 NP_001278376
TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SALL2-004ENST000005463633094902aaENSP00000440054
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YFS7 NP_001278375
CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SALL2-003ENST000006134141566200aaENSP00000483202
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A0B4J2F7 -TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SALL2-005ENST000006114301466198aaENSP00000484460
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-A0A087X1T9 -TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
SALL2-008ENST00000537235659191aaENSP00000438493
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5H433 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

SALL2-009ENST0000054196555399aaENSP00000439654
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-F5H1G6 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:2

Transcript Support Level 2, when transcripts are supported by multiple ESTs or by an mRNA flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays