Description

paired-like homeobox 2a [Source:HGNC Symbol;Acc:HGNC:691]

Synonyms

ARIX, CFEOM2, FEOM2, PMX2A

Location
INSDC coordinates

chromosome:GRCh38:CM000673.2:72239077:72245664:1

About this gene

This gene has 3 transcripts (splice variants), 52 orthologues, 14 paralogues, is a member of 2 Ensembl protein families and is associated with 2 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
PHOX2A-001ENST000002982311699284aaENSP00000298231
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS8214O14813 NM_005169
NP_005160
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI1APPRIS principal isoform
Glossary entry for APPRIS
APPRIS website
PHOX2A-002ENST0000054631092885aaENSP00000444845
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-H0YGU5 -CDS 5' incomplete5' truncation in transcript evidence prevents annotation of the start of the CDS.TSL:5

TSL5: No single transcript (mRNA or EST) supports this transcript model's structure.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

PHOX2A-003ENST00000544057605No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays