Description

msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391]

Synonyms

HOX7, HYD1, OFC5

Location
INSDC coordinates

chromosome:GRCh38:CM000666.2:4859666:4863936:1

About this gene

This gene has 2 transcripts (splice variants), 58 orthologues, 7 paralogues, is a member of 1 Ensembl protein family and is associated with 6 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
MSX1-001ENST000003827231939303aaENSP00000372170
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3378P28360 NM_002448
NP_002439
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

MSX1-002ENST00000468421509No protein-
 
Processed transcriptTranscripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.
---TSL:3

Transcript Support Level 3, when transcripts are supported by a single EST only.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays