Description

tumor necrosis factor (ligand) superfamily, member 13 [Source:HGNC Symbol;Acc:HGNC:11928]

Synonyms

APRIL, CD256

Location
INSDC coordinates

chromosome:GRCh38:CM000679.2:7558292:7561608:1

About this gene

This gene has 9 transcripts (splice variants), 17 orthologues, 3 paralogues, is a member of 1 Ensembl protein family and is associated with 24 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
TNFSF13-201ENST000003805352195223aaENSP00000369908
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS73957Q2QBA2 NM_001198622
NP_001185551
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TNFSF13-003ENST000003492282036234aaENSP00000314455
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11112O75888 NM_172087
NP_742084
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TNFSF13-001ENST000003387841971250aaENSP00000343505
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS11111O75888 NM_003808
NP_003799
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS PI3APPRIS candidate principal isoform (earliest CCDS)
Glossary entry for APPRIS
APPRIS website
TNFSF13-004ENST000003965451593247aaENSP00000379794
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS42256O75888 NM_172088
NP_742085
TSL:1

TSL1: All splice junctions of the transcript are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS ALT1APPRIS candidate principal isoform that is conserved in at least three tested non-primate species
Glossary entry for APPRIS
APPRIS website
TNFSF13-006ENST00000396542726205aaENSP00000379792
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS56019O75888 NM_001198624
NP_001185553
TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TNFSF13-005ENST00000483039959114aaENSP00000464998
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-K7EJ28 -TSL:2

TSL2: The best supporting mRNA is flagged as suspect or the support is from multiple ESTs.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TNFSF13-009ENST00000625791955222aaENSP00000486052
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
--NM_001198623
NP_001185552
GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).
TNFSF13-008ENST00000436057573158aaENSP00000410094
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JF68 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

TNFSF13-007ENST00000438470549150aaENSP00000390771
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9JFN2 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:3

TSL3:The only support for this transcript is from a single EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays