Description

general transcription factor IIE, polypeptide 1, alpha 56kDa [Source:HGNC Symbol;Acc:HGNC:4650]

Synonyms

FE, TFIIE-A

INSDC coordinates

chromosome:GRCh38:CM000665.2:120742637:120783069:1

About this gene

This gene has 5 transcripts (splice variants), 69 orthologues, is a member of 2 Ensembl protein families and is associated with 73 phenotypes.

NameTranscript IDbpProteinTranslation IDBiotypeCCDSUniProtRefSeqFlags
GTF2E1-001ENST000002838753012439aaENSP00000283875
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
CCDS3002P29083 NM_005513
NP_005504
TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GENCODE basicThe GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).APPRIS P1

PRINCIPAL1 - APPRIS candidate principal isoform.

APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods.

GTF2E1-003ENST00000492959551122aaENSP00000417077
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-E9PER7 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GTF2E1-002ENST0000048471554349aaENSP00000417342
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9J329 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:4

Transcript Support Level 4, for transcripts supported by an EST flagged as suspect.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GTF2E1-006ENST00000469772503129aaENSP00000418808
 
Protein codingGenes and/or transcript that contains an open reading frame (ORF).
-C9IYL4 -CDS 3' incomplete3' truncation in transcript evidence prevents annotation of the end of the CDS.TSL:5

Transcript Support Level 5, for transcripts that are not supported at all by either an mRNA or an EST.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

GTF2E1-005ENST00000497393567No protein-
 
Retained intronAlternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.
---TSL:1

Transcript Support Level 1, when transcripts are supported by at least one non-suspect mRNA.

The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users. The method relies on the primary data that can support full-length transcript structure: mRNA and EST alignments supplied by UCSC and Ensembl.

Gene-based displays